Functional Medicine Practice Software That Works Between the Visits

Functional medicine runs on a long arc: a deep intake, a panel of specialty labs, and a protocol that unfolds over months — supplements, nutrition, and lifestyle changes the patient has to follow at home, long after the appointment ends. Most functional-medicine software handles the in-office side well: charting, lab ordering, supplement dispensing. BodySite does that too — and then keeps going, into the weeks between visits where root-cause results are actually won or lost. It’s practice management and EMR with a complete patient-education and engagement platform built in, made for practices whose outcomes depend on adherence, not just documentation.

The functional-medicine gap: your protocol lasts three months; your visit lasts an hour. Nearly every EHR optimizes the hour. BodySite is built for the other 700 — guiding, tracking, and supporting the patient through the protocol day by day, so they actually finish it.

Built for the way functional medicine actually works

BodySite maps to the full functional-medicine arc — not just the chart note.

1. Intake & history

55+ ready-made forms, questionnaires, and consents out of the box — fully customizable, or bring and build your own detailed functional-medicine intakes.

2. Specialty labs

Order and manage specialty testing through Fullscript and Rupa — covering Quest and many major and specialty labs functional-medicine practices rely on.

3. Protocol & supplements

Recommend and dispense supplements through Fullscript, and deliver the full protocol as a structured, multi-week care plan — not a PDF the patient loses.

4. Between-visit adherence

Automated daily drip emails and in-app lessons, videos, recipes, and reminders keep the patient on protocol — the part that decides whether root-cause care works.

5. Tracking & follow-up

Patients log food, body metrics, activity, and symptoms in the app; you see progress, message them, and adjust the protocol before the next visit — not months later.

The between-visit engine other EHRs don’t have

This is where BodySite is genuinely different for functional medicine. You start with 100+ done-for-you care plans and courses — delivered automatically as daily lessons, videos, recipes, and exercises — so the patient is guided through their protocol every day, not handed a binder and forgotten until the recheck. Around that sits a native app patients open daily: food logging by photo or barcode, body and activity tracking, journaling, two-way messaging with photos and attachments, and one-on-one or group telehealth for up to 50. And it’s social — group chats and discussion forums let patients on similar protocols support each other and stay accountable. For a long, demanding functional-medicine protocol, that daily structure is the difference between a patient who completes it and one who quietly drops off at week three.

Everything the practice needs, on flat pricing

Specialty lab ordering

Fullscript & Rupa — Quest and many specialty labs, ordered and tracked in one place.

Supplement dispensing

Recommend and dispense through Fullscript, tied to the patient’s plan.

100+ done-for-you protocols

Ready-made care plans and courses, plus full tools to build your own.

Native patient app & tracking

Food logging by photo & barcode, body metrics, activity, and journaling — iPhone and Android.

Configurable charting

Blank templates and custom forms, with an integrated AI scribe (DoraScribe).

Telehealth, 1:1 & group

Included — individual visits and group sessions or webinars up to 50.

ePrescribing

Optional add-on ($40/mo, EPCS included) for practices that prescribe.

Memberships & packages

Subscriptions engine for recurring programs — any frequency, custom dates.

Flat, unlimited-client pricing

From $69/mo; unlimited clients from $159/mo — no per-patient fees.

Where BodySite fits — and where it doesn’t

Here’s the honest picture. A growing number of cash-pay functional-medicine practices run their entire practice on BodySite — scheduling, booking, charting, billing, labs, ePrescribing, and the engagement layer — and some are actively replacing older clinical systems with it. BodySite doesn’t file insurance claims, and a practice that bills insurance or wants the deepest specialty clinical tooling (extensive IV-therapy protocol libraries, for example) may keep a dedicated clinical EHR alongside it. But if you’re cash-based, BodySite can be your complete system of record — the sticky platform your whole practice runs on — not just the between-visit layer on top of someone else’s. And that between-visit layer is still the part no clinical EHR matches: ready-made protocols, a real patient app, daily engagement, tracking, and community.

Trusted by thousands of practices

More than 5,000 providers and 700,000+ patients run on BodySite — on simple, flat pricing from $69/month with unlimited clients from $159. Every plan includes the full patient-education library, the native patient app, and telehealth.

Functional medicine software FAQ

Does BodySite order specialty labs for functional medicine?

Yes. BodySite orders and manages labs through Fullscript and Rupa, covering Quest and many major and specialty labs functional-medicine practices use. Direct LabCorp ordering, imaging, and inventory are the areas BodySite doesn’t cover natively.

Can patients get their supplements through BodySite?

Yes — supplement recommendations and dispensing run through the Fullscript integration, tied to the patient’s protocol and care plan.

Does BodySite support membership and package billing?

Yes. BodySite includes a subscriptions and billing engine for recurring programs, memberships, and packages — any frequency, with custom start and stop dates. It’s built for cash-pay practices and does not file insurance claims.

Can I customize charting for functional-medicine intakes and protocols?

Yes. BodySite’s charting is fully configurable — blank templates plus 55+ ready-made forms, questionnaires, and consents you can adapt to detailed functional-medicine intakes and timelines, or build your own from scratch, with an integrated AI scribe.

What makes BodySite different for functional medicine specifically?

The between-visit layer. Functional-medicine protocols run for months and depend on what the patient does at home. BodySite delivers 100+ ready-made protocols as automated daily guidance, a native app for food and symptom tracking, two-way messaging, group visits, and a patient community — so patients actually complete their protocols. Most functional-medicine EHRs stop at the chart; BodySite carries the protocol all the way through.

Try BodySite free for 30 days — every plan includes the full patient education library, the native patient app, and telehealth. Or watch a demo to see it built around your functional-medicine workflow.